PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0494s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 318aa    MW: 36016.2 Da    PI: 5.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0494s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1885133355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++ ++g
  SapurV1A.0494s0080.1.p  85 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARIIRG 133
                             9*******.**********954...4*******************99988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-3884147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3284142IPR001471AP2/ERF domain
PROSITE profilePS5103223.16984141IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2284142IPR016177DNA-binding domain
PfamPF008471.2E-1185126IPR001471AP2/ERF domain
CDDcd000182.12E-3285142No hitNo description
PRINTSPR003678.4E-128596IPR001471AP2/ERF domain
PRINTSPR003678.4E-12107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MCGGAILAEI IPRNRARREA ASEFWPNATF NKLSPFDSFL SPLSNQEESF TLKRPRPQPQ  60
PQPRPISETA QVEKPNAKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA  120
ARAYDREARI IRGKKAKVNF PNEDEHNYTY QNSKTKPPMY PAPTCHFSKG YDFGYGSGMN  180
QIESYSSNGF NGQPIVTSGD DSGSTSEEGT RLVDCNHNLE SDVYMGQVKL EMEEEKLEKV  240
KNKEVVLVDL ETGMEENEVQ KLTEELIAYE NYMKFYQIPY LDGQSMAPNG STQENLVGNL  300
WNFDDDSVAP PITSAPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2185141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009990.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLB9GSD40.0B9GSD4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-29ethylene-responsive element binding protein